Publications

Anderson S., *Franzè G., Kling J., Wilburn P., Kremer C., *Menden-Deuer S., Litchman E., Hutchins D., Rynearson T. 2022. The interactive effects of temperature and nutrients on a spring phytoplankton community Limnology and Oceanography. doi: 10.1002/lno.12023.

Menden-Deuer S., W.H. Slade and H. Dierssen. 2021. Promoting Instrument Development for New Research Avenues in Ocean Science: Opening the Black Box of Grazing Frontiers in Marine Sciences - Ocean Observation. https://doi.org/10.3389/fmars.2021.695938.

Menden-Deuer S., J. Rowlett, M. Nursultanov, S. Collins, T. Rynearson. 2021. Biodiversity of marine microbes is safeguarded by phenotypic heterogeneity in ecological traits PLoS ONE 16(8): e0254799. https://doi.org/10.1371/journal. pone.0254799.

*Fulfer V.M. & S. Menden-Deuer. 2021. Heterotrophic Dinoflagellate Growth and Grazing Rates Reduced by Microplastic Ingestion Frontiers in Marine Sciences. doi.org/10.3389/fmars.2021.716349.

Siegel D. A., ... H. McNair*, S. Menden-Deuer, F. Morison*, et al. 2021. An operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment Elementa Science of the Anthropocene.

*McNair H., F. Morison*, J.R. Graff T.A. Rynearson & S. Menden-Deuer. 2021. Microzooplankton grazing constrains pathways of carbon export in the subarctic North Pacific Limnology and Oceanography, https://doi.org/10.1002/lno.11783.

*McNair H., C. N. Hammond* & S. Menden-Deuer. 2021. Phytoplankton carbon and nitrogen biomass estimates are robust to volume measurement method and growth environment. Journal of Plankton Research, https://doi.org/10.1093/plankt/fbab014.

*Marrec P., A. Miller*, L. Maranda & S. Menden-Deuer. 2021. Virtual and remote, but hands-on undergraduate research in plankton ecology during the 2020 pandemic – covid-19 can’t stop this! Oceanography, https://doi.org/10.5670/oceanog.2021.104.

*Kane, M. K., A. Atkinson & S. Menden-Deuer. 2021. Lowered cameras reveal hidden behaviors of Antarctic krill. Current Biology, https://doi.org/10.1016/j.cub.2021.01.091.

*Marrec P., H. McNair*, G. Franzè, F. Morison*, J. P. Strock* & S. Menden-Deuer. 2021. Seasonal variability in planktonic food web structure and function of the Northeast U.S. Shelf. Limnology and Oceanography, https://doi.org/10.1002/lno.11696.

Strock, J.P. & S. Menden-Deuer. 2020. Temperature acclimation alters phytoplankton growth and production rates. Limnology and Oceanography, https://doi.org/10.1002/lno.11637.

Walcutt N*, Knorlein M, Cetinic I, Ljubesic Z, Bosak S, Sgouros T, Montalbano A, Neeley A, Menden-Deuer S, and Omand M. 2020. Assessment of holographic microscopy for quantifying marine particle size and concentration. Limnology and Oceanography: Methods.

*Morison F, Pierson J, *Oikonomou A, & S Menden-Deuer. 2020. Mesozooplankton grazing minimally impacts phytoplankton abundance during spring in the western North Atlantic. Peer J. doi: 10.7717/peerj.9430.

*Morison F, *G Franzè, E Harvey & S Menden-Deuer. 2020. Frequency of light fluctuations is key in modulating plankton trophic dynamics and their impact on primary production. Limnology & Oceanography – Letters. doi: 10.1002/lol2.10156.

Menden-Deuer S, *F Morison, AL Montalbano, *G Franzè, *J Strock, *E Rubin, *H McNair, C Mouw & *P Marrec. 2020. Multi-instrument assessment of phytoplankton abundance and cell sizes in mono-specific laboratory cultures and whole plankton community composition in the North Atlantic. Frontiers in Marine Sciences. doi.org/10.3389/fmars.2020.00254

Bolaños L, L Karp-Boss, CJ Choi, AZ Worden, J Graff, N Haëntjens, A Chase, A Della Penna, P Gaube, *F Morison, S Menden-Deuer, T Westberry, E Boss, M Behrenfeld, R O’Malley& S Giovannoni. 2020. Small phytoplankton dominate western North Atlantic biomass. The ISME Journal.

*Franzè G and Menden-Deuer S. 2020. Common temperature – growth dependency and acclimation response in three herbivorous protists. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13200.

*McNair H. and Menden-Deuer S. 2020. Protist grazing contributes to microbial food web at the upper boundary of the twilight zone in the subarctic Pacific. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13246.

*Morison F., Harvey E., Franze G., and Menden-Deuer S. 2019. Storm-induced predator-prey decoupling promotes springtime accumulation of North Atlantic phytoplankton. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00608.

*Roohani K, *Haubrich BA, *Yue KL, *D’Souza N, Montalbano A, Rynearson TA, Menden-Deuer S and Christopher W. Reid 2019 Trophic upgrading and mobilization of wax esters in microzooplankton PeerJ

*Rubin E, Cheng S, Montalbano A, Menden-Deuer S and Rynearson T. 2019. Transcriptomic response to feeding and starvation in a herbivorous dinoflagellate. Frontiers in Marine Science: Aquatic MIcrobiology. doi: 10.3389/fmars.2019.00246

Behrenfeld M., Moore R., Hostetler C., Graff J., Gaube P., Russell L., Chen G., Doney S., Giovannoni S., Liu H., Proctor C., Bolanos L., Huynh N., Davie-Martin C., Westberry T., Bates T., Bell T., Bidle K., Boss E., Brooks S., Carins B., Carlson C., Halsey K., Harvey E., Hu C., Karp-Boss L., Kleb M., Menden-Deuer S., *Morison F., Quinn P., Scarino A., Anderson B., Chowdhary J., Crosbie E., Ferrare R., Hair J., Hu Y., Janz S., Redemann J., Saltzman E., Shook M., Siegel D., Yang Martin M., Ziemba L. 2019. The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science motive and mission overview. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00122.

*Kane M., Yopak R., Roman C., and S Menden-Deuer. 2018. Krill motion in the Southern Ocean: quantifying in situ krill movement behaviors and distributions during the late austral autumn and spring Limnology and Oceanography. https://doi.org/10.1002/lno.11024

* Morison F and S. Menden-Deuer. 2018. Seasonal similarity in rates of protistan herbivory in fjords along the Western Antarctic Peninsula Limnology and Oceanography.

Menden-Deuer S., Lawrence C. and *G. Franzè. 2018. Herbivorous protist growth and grazing rates at in situ and artificially elevated temperatures during an Arctic phytoplankton spring bloom. PeerJ. 10.7717/peerj.5264

Menden-Deuer S. & Rowlett J. 2018. The theory of games and microbe ecology. Theoretical Ecology

Lindeman C, DL Aknes, KJ Flynn & S Menden-Deuer. 2017 Modeling the Plankton–Enhancing the Integration of Biological Knowledge and Mechanistic Understanding. Frontiers in Marine Science

Xenopoulos MA, JA Downing, M Deep Kumar, S Menden-Deuer & M Voss. 2017 Headwaters to oceans: Ecological and biogeochemical contrasts across the aquatic continuum. Limnology and Oceanography

*Morison F & Menden-Deuer S 2017 Doing more with less: balancing sampling resolution with effort in measuring plankton growth and grazing rates Limnology & Oceanography: Methods

Grear J, T Rynearson, A Montalbano, B Govenar & S Menden-Deuer 2017 pCO2 effects on incubated, whole phytoplankton community species composition and production in a productive estuary. Estuarine, Coastal and Shelf Science

*Anderson SR & S Menden-Deuer 2016 Growth, grazing, and starvation survival in three heterotrophic dinoflagellate species Journal of Eukaryotic Microbiology

Menden-Deuer S & Kiørboe T. 2016 Small bugs with a big impact: linking plankton ecology with ecosystem processes Journal of Plankton Ecology. doi: 10.1093/plankt/fbw049//

Snelgrove, P., E. Vanden Berghe, P. Miloslavich, P. Archambault, N. Bailly, A. Brandt, A. Bucklin, M. Clark, F. Dahdouh-Guebas, P. Halpin, R. Hopcroft, K. Kaschner, B. Lascelles, L.A. Levin, S. Menden-Deuer, A. Metaxas, D. Obura, R. R. Reeves, T. Rynearson, K. Stocks, M. Tarzia, D. Tittensor, V. Tunnicliffe, B. Wallace, R. Wanless, T. Webb, P. Bernal, J. Rice, A. Rosenberg. 2016. Chapter 34: Gradients in Marine Biodiversity. In The United Nations World Ocean Assessment, published by the United Nations as part of the Global Reporting and Assessment of the State of the Marine Environment

*Graff J. & Menden-Deuer S. 2016 Physical and optical properties of plankton rich layers; toward prediction and strategic sampling of plankton patchiness. Marine Ecology Progress Series. Feature Article

Rynearson T. & Menden-Deuer S. 2016 Drivers that structure biodiversity in the plankton. Aquatic Microbial Ecology and Biogeochemistry: A dual perspective

*Orchard MJ, S Humphries, *Schuech R & S Menden-Deuer 2016 The influence of viscosity on the motility and sensory ability of the dinoflagellate, Heterocapsa triquetra. Journal of Plankton Research

*Harvey EL., Rynearson T. & Menden-Deuer S. 2015 Persistent intra-specific variation in genetic and behavioral traits in the raphidophyte, Heterosigma akashiwo. Frontiers in Microbiology

*Morison F. & Menden-Deuer S. 2015 Early spring phytoplankton dynamics in the subpolar North Atlantic: The influence of Protistan Herbivory. Limnology and Oceanography

Menden-Deuer S. & Montalbano A. 2015 Bloom formation potential in the toxic dinoflagellate Akashiwo sanguinea: clues from movement behaviors and growth characteristics. Harmful Algae

*Kim H & Menden-Deuer S. 2014 Estimating the effects of ocean acidification-induced behavioral shifts on primary production rates of Heterosigma akashiwo. Proceedings of the International Society for the Study of Harmful Algae.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing PLoS Biol 12(6): e1001889. doi:10.1371/journal.pbio.1001889

*Schuech R & Menden-Deuer S. 2014. Going ballistic in the plankton – anisotropic swimming behavior of marine protists. Limnology & Oceanography: Fluids & Environments: 4: 1-16

Menden-Deuer S. & Rowlett J. 2014. Behavioral heterogeneity maintains high species diversity in the plankton. Journal of the Royal Society Interface. 11: 20140031

*Chappell PD., *Whitney LP., *Haddock TL., Menden-Deuer S., Roy EG., Wells ML. & BD Jenkins 2013. Thalassiosira spp. community composition shifts in response to an eddy in the northeast Pacific Ocean Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00273

Rubin CB., Menden-Deuer S. & EL*Harvey. 2013. Plankton on the Move. Leonardo 46:412-413.

*Kim H & S Menden-Deuer. 2013. Reliability of rapid, semi-automated assessment of plankton abundance, biomass, and growth rate estimates: Coulter Counter versus light microscope measurements. Limnology & Oceanography Methods 11: 382-393

*Harvey EL, HJ Jeong & S Menden-Deuer. 2013. Avoidance and attraction: Chemical cues influence predator-prey interactions of planktonic protists Limnology & Oceanography. 58:1176-1184

*Kim H., Spivak A. & S. Menden-Deuer. In Press. Lowered pH alters the swimming behaviors of the raphidophyte Heterosigma akashiwo: implications for bloom formation in an acidified ocean Harmful Algae. 26:1-11

Strom SL., *Harvey EL., Fredrickson KA. & S. Menden-Deuer. 2013. Broad halotolerance as a refuge from predation in the harmful raphidophyte alga Heterosigma akashiwo Journal of Phycology. 49:20-31

*Graff JR., *Forschner-Dancause SR., Menden-Deuer S., Long R. & DC. Rowley. 2013. Vibrio cholerae exploits sub-lethal concentrations of a competitor-produced antibiotic to avoid toxic interactions. Frontiers in Microbiology. 4:8. doi: 10.3389/fmicb.2013.00008

*Harvey EL. & S. Menden-Deuer. 2012. Predator-induced fleeing behaviors in phytoplankton: a new mechanism for harmful algal bloom formation? PLoS ONE. 7(9):e46438 doi: 10/1371/journal.pone.0046438

Menden-Deuer S. 2012. Structure-dependent phytoplankton photosynthesis and production: implications for the formation, maintenance, and decline of plankton patches Marine Ecology Progress Series. 468:15-30

*Lawrence CM, & S. Menden-Deuer. 2012. Drivers of protistan grazing pressure: seasonal signals of plankton community composition and environmental conditions Marine Ecology Progress Series 459:39-52

*Harvey EL, & S. Menden-Deuer. 2011. Avoidance, movement, and mortality: the role of predator-prey interactions in harmful algal bloom dynamics Limnology and Oceanography 56:371-378

Menden-Deuer S & Fredrickson KA. 2010. Structure-dependent, protistan grazing and its implication for the formation, maintenance and decline of plankton patches Marine Ecology Progress Series 420: 57-71

Menden-Deuer S. 2010. Inherent high correlation of individual motility enhances population dispersal in a heterotrophic, planktonic protist PLoS Computational Biology. 6(10) e1000942 doi: 10.1371

Menden-Deuer S., Fredrickson KA. & SL. Strom 2010. Formation and decline of a Heterosigma akashiwo layer in East Sound, Washington, USA In K. C. Ho, M. Y. Zhou, and Y.Z. Qi [eds.], Harmful algae 2008. International Society for the Study of Harmful Algae, Hong Kong:98-103.

Menden-Deuer S. 2008. Spatial and temporal characteristics of plankton-rich layers in a shallow, temperate fjord Marine Ecology Progress Series 355: 21-30

Menden-Deuer S. 2006. An integrated model simulation and empirical laboratory on biological encounter rates Oceanography 19(4):185-189

Menden-Deuer S & D Grünbaum. 2006. Individual foraging behaviors and population distributions of planktonic predators aggregating to phytoplankton layers Limnology & Oceanography 51:109-116

Menden-Deuer S, EJ Lessard, J Satterberg* & D Grünbaum. 2005. Growth and starvation survival capacity of three species of the pallium feeding thecate dinoflagellate genus Protoperidinium (Peridiniacea, Dinophyceae) distributions Aquatic Microbial Ecology 41: 145-152

Saldarriaga JF, FJR Taylor, T Cavalier-Smith, S Menden-Deuer & PJ Keeling. 2004. Molecular data and the evolutionary history of dinoflagellates European Journal of Protistology 40: 85-111

Skovgaard A & S Menden-Deuer. 2003. Long-term exposure of dinoflagellates to 14C: Effects on growth rate and measurements of carbon content Journal of Plankton Research 25: 1005-1009

Smetacek V, C Klaas, S Menden-Deuer & TA Rynearson. 2002. Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front Deep-Sea Research II 49: 3835-3848

Menden-Deuer S, EJ Lessard & J Satterberg*. 2001. Effect of preservation on dinoflagellate and diatom cell volume, and consequences for carbon biomass predictions Marine Ecology Progress Series 222: 41-50

Menden-Deuer S & EJ Lessard. 2000. Carbon to volume relationships for dinoflagellates, diatoms, and other protist plankton Limnology & Oceanography 45: 569-579

Anderson S., *Franzè G., Kling J., Wilburn P., Kremer C., *Menden-Deuer S., Litchman E., Hutchins D., Rynearson T. 2022. The interactive effects of temperature and nutrients on a spring phytoplankton community Limnology and Oceanography. doi: 10.1002/lno.12023.

Menden-Deuer S., W.H. Slade and H. Dierssen. 2021. Promoting Instrument Development for New Research Avenues in Ocean Science: Opening the Black Box of Grazing Frontiers in Marine Sciences - Ocean Observation. https://doi.org/10.3389/fmars.2021.695938.

Menden-Deuer S., J. Rowlett, M. Nursultanov, S. Collins, T. Rynearson. 2021. Biodiversity of marine microbes is safeguarded by phenotypic heterogeneity in ecological traits PLoS ONE 16(8): e0254799. https://doi.org/10.1371/journal. pone.0254799.

*Fulfer V.M. & S. Menden-Deuer. 2021. Heterotrophic Dinoflagellate Growth and Grazing Rates Reduced by Microplastic Ingestion Frontiers in Marine Sciences. doi.org/10.3389/fmars.2021.716349.

Siegel D. A., ... H. McNair*, S. Menden-Deuer, F. Morison*, et al. 2021. An operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment Elementa Science of the Anthropocene.

*McNair H., F. Morison*, J.R. Graff T.A. Rynearson & S. Menden-Deuer. 2021. Microzooplankton grazing constrains pathways of carbon export in the subarctic North Pacific Limnology and Oceanography, https://doi.org/10.1002/lno.11783.

*McNair H., C. N. Hammond* & S. Menden-Deuer. 2021. Phytoplankton carbon and nitrogen biomass estimates are robust to volume measurement method and growth environment. Journal of Plankton Research, https://doi.org/10.1093/plankt/fbab014.

*Marrec P., A. Miller*, L. Maranda & S. Menden-Deuer. 2021. Virtual and remote, but hands-on undergraduate research in plankton ecology during the 2020 pandemic – covid-19 can’t stop this! Oceanography, https://doi.org/10.5670/oceanog.2021.104.

*Kane, M. K., A. Atkinson & S. Menden-Deuer. 2021. Lowered cameras reveal hidden behaviors of Antarctic krill. Current Biology, https://doi.org/10.1016/j.cub.2021.01.091.

*Marrec P., H. McNair*, G. Franzè, F. Morison*, J. P. Strock* & S. Menden-Deuer. 2021. Seasonal variability in planktonic food web structure and function of the Northeast U.S. Shelf. Limnology and Oceanography, https://doi.org/10.1002/lno.11696.

Strock, J.P. & S. Menden-Deuer. 2020. Temperature acclimation alters phytoplankton growth and production rates. Limnology and Oceanography, https://doi.org/10.1002/lno.11637.

Walcutt N*, Knorlein M, Cetinic I, Ljubesic Z, Bosak S, Sgouros T, Montalbano A, Neeley A, Menden-Deuer S, and Omand M. 2020. Assessment of holographic microscopy for quantifying marine particle size and concentration. Limnology and Oceanography: Methods.

*Morison F, Pierson J, *Oikonomou A, & S Menden-Deuer. 2020. Mesozooplankton grazing minimally impacts phytoplankton abundance during spring in the western North Atlantic. Peer J. doi: 10.7717/peerj.9430.

*Morison F, *G Franzè, E Harvey & S Menden-Deuer. 2020. Frequency of light fluctuations is key in modulating plankton trophic dynamics and their impact on primary production. Limnology & Oceanography – Letters. doi: 10.1002/lol2.10156.

Menden-Deuer S, *F Morison, AL Montalbano, *G Franzè, *J Strock, *E Rubin, *H McNair, C Mouw & *P Marrec. 2020. Multi-instrument assessment of phytoplankton abundance and cell sizes in mono-specific laboratory cultures and whole plankton community composition in the North Atlantic. Frontiers in Marine Sciences. doi.org/10.3389/fmars.2020.00254

Bolaños L, L Karp-Boss, CJ Choi, AZ Worden, J Graff, N Haëntjens, A Chase, A Della Penna, P Gaube, *F Morison, S Menden-Deuer, T Westberry, E Boss, M Behrenfeld, R O’Malley& S Giovannoni. 2020. Small phytoplankton dominate western North Atlantic biomass. The ISME Journal.

*Franzè G and Menden-Deuer S. 2020. Common temperature – growth dependency and acclimation response in three herbivorous protists. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13200.

*McNair H. and Menden-Deuer S. 2020. Protist grazing contributes to microbial food web at the upper boundary of the twilight zone in the subarctic Pacific. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13246.

*Morison F., Harvey E., Franze G., and Menden-Deuer S. 2019. Storm-induced predator-prey decoupling promotes springtime accumulation of North Atlantic phytoplankton. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00608.

*Roohani K, *Haubrich BA, *Yue KL, *D’Souza N, Montalbano A, Rynearson TA, Menden-Deuer S and Christopher W. Reid 2019 Trophic upgrading and mobilization of wax esters in microzooplankton PeerJ

*Rubin E, Cheng S, Montalbano A, Menden-Deuer S and Rynearson T. 2019. Transcriptomic response to feeding and starvation in a herbivorous dinoflagellate. Frontiers in Marine Science: Aquatic MIcrobiology. doi: 10.3389/fmars.2019.00246

Behrenfeld M., Moore R., Hostetler C., Graff J., Gaube P., Russell L., Chen G., Doney S., Giovannoni S., Liu H., Proctor C., Bolanos L., Huynh N., Davie-Martin C., Westberry T., Bates T., Bell T., Bidle K., Boss E., Brooks S., Carins B., Carlson C., Halsey K., Harvey E., Hu C., Karp-Boss L., Kleb M., Menden-Deuer S., *Morison F., Quinn P., Scarino A., Anderson B., Chowdhary J., Crosbie E., Ferrare R., Hair J., Hu Y., Janz S., Redemann J., Saltzman E., Shook M., Siegel D., Yang Martin M., Ziemba L. 2019. The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science motive and mission overview. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00122.

*Kane M., Yopak R., Roman C., and S Menden-Deuer. 2018. Krill motion in the Southern Ocean: quantifying in situ krill movement behaviors and distributions during the late austral autumn and spring Limnology and Oceanography. https://doi.org/10.1002/lno.11024

* Morison F and S. Menden-Deuer. 2018. Seasonal similarity in rates of protistan herbivory in fjords along the Western Antarctic Peninsula Limnology and Oceanography.

Menden-Deuer S., Lawrence C. and *G. Franzè. 2018. Herbivorous protist growth and grazing rates at in situ and artificially elevated temperatures during an Arctic phytoplankton spring bloom. PeerJ. 10.7717/peerj.5264

Menden-Deuer S. & Rowlett J. 2018. The theory of games and microbe ecology. Theoretical Ecology

Lindeman C, DL Aknes, KJ Flynn & S Menden-Deuer. 2017 Modeling the Plankton–Enhancing the Integration of Biological Knowledge and Mechanistic Understanding. Frontiers in Marine Science

Xenopoulos MA, JA Downing, M Deep Kumar, S Menden-Deuer & M Voss. 2017 Headwaters to oceans: Ecological and biogeochemical contrasts across the aquatic continuum. Limnology and Oceanography

*Morison F & Menden-Deuer S 2017 Doing more with less: balancing sampling resolution with effort in measuring plankton growth and grazing rates Limnology & Oceanography: Methods

Grear J, T Rynearson, A Montalbano, B Govenar & S Menden-Deuer 2017 pCO2 effects on incubated, whole phytoplankton community species composition and production in a productive estuary. Estuarine, Coastal and Shelf Science

*Anderson SR & S Menden-Deuer 2016 Growth, grazing, and starvation survival in three heterotrophic dinoflagellate species Journal of Eukaryotic Microbiology

Menden-Deuer S & Kiørboe T. 2016 Small bugs with a big impact: linking plankton ecology with ecosystem processes Journal of Plankton Ecology. doi: 10.1093/plankt/fbw049//

Snelgrove, P., E. Vanden Berghe, P. Miloslavich, P. Archambault, N. Bailly, A. Brandt, A. Bucklin, M. Clark, F. Dahdouh-Guebas, P. Halpin, R. Hopcroft, K. Kaschner, B. Lascelles, L.A. Levin, S. Menden-Deuer, A. Metaxas, D. Obura, R. R. Reeves, T. Rynearson, K. Stocks, M. Tarzia, D. Tittensor, V. Tunnicliffe, B. Wallace, R. Wanless, T. Webb, P. Bernal, J. Rice, A. Rosenberg. 2016. Chapter 34: Gradients in Marine Biodiversity. In The United Nations World Ocean Assessment, published by the United Nations as part of the Global Reporting and Assessment of the State of the Marine Environment

*Graff J. & Menden-Deuer S. 2016 Physical and optical properties of plankton rich layers; toward prediction and strategic sampling of plankton patchiness. Marine Ecology Progress Series. Feature Article

Rynearson T. & Menden-Deuer S. 2016 Drivers that structure biodiversity in the plankton. Aquatic Microbial Ecology and Biogeochemistry: A dual perspective

*Orchard MJ, S Humphries, *Schuech R & S Menden-Deuer 2016 The influence of viscosity on the motility and sensory ability of the dinoflagellate, Heterocapsa triquetra. Journal of Plankton Research

*Harvey EL., Rynearson T. & Menden-Deuer S. 2015 Persistent intra-specific variation in genetic and behavioral traits in the raphidophyte, Heterosigma akashiwo. Frontiers in Microbiology

*Morison F. & Menden-Deuer S. 2015 Early spring phytoplankton dynamics in the subpolar North Atlantic: The influence of Protistan Herbivory. Limnology and Oceanography

Menden-Deuer S. & Montalbano A. 2015 Bloom formation potential in the toxic dinoflagellate Akashiwo sanguinea: clues from movement behaviors and growth characteristics. Harmful Algae

*Kim H & Menden-Deuer S. 2014 Estimating the effects of ocean acidification-induced behavioral shifts on primary production rates of Heterosigma akashiwo. Proceedings of the International Society for the Study of Harmful Algae.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing PLoS Biol 12(6): e1001889. doi:10.1371/journal.pbio.1001889

*Schuech R & Menden-Deuer S. 2014. Going ballistic in the plankton – anisotropic swimming behavior of marine protists. Limnology & Oceanography: Fluids & Environments: 4: 1-16

Menden-Deuer S. & Harvey* EL. 2010. Avoidance, movement, and mortality: the role of predator-prey interactions in harmful algal bloom dynamics Eastern Pacific Ocean Conference, Mt. Hood, OR

Menden-Deuer S. & Rowlett J. 2014. Behavioral heterogeneity maintains high species diversity in the plankton. Journal of the Royal Society Interface. 11: 20140031

*Chappell PD., *Whitney LP., *Haddock TL., Menden-Deuer S., Roy EG., Wells ML. & BD Jenkins 2013. Thalassiosira spp. community composition shifts in response to an eddy in the northeast Pacific Ocean Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00273

Menden-Deuer S. 2010. High-correlation of individual motility enhances population dispersal rates in a heterotrophic protist Gordon Research Conference, Marine Microbes, Tilton, NH

Harvey EL* & S. Menden-Deuer. 2010. The role of halo-tolerance in providing a refuge for the toxic raphidophyte alga, Heterosigma akashiwo from heterotrophic protists and enhancing bloom formation. Gordon Research Conference, Marine Microbes, Tilton, NH

Rubin CB., Menden-Deuer S. & EL*Harvey. 2013. Plankton on the Move. Leonardo 46:412-413.

Menden-Deuer S. 2010. Plankton on the move: effects of consumer foraging behaviors on marine microbial food webs. Seoul National University, Seoul, Korea (invited)

*Kim H & S Menden-Deuer. 2013. Reliability of rapid, semi-automated assessment of plankton abundance, biomass, and growth rate estimates: Coulter Counter versus light microscope measurements. Limnology & Oceanography Methods 11: 382-393

Menden-Deuer S, Harvey* EL, Day* WA & KA Fredrickson. 2010. Patchy prey and stealthy predators: enhanced protist grazing pressure within phytoplankton patches Ocean Sciences Meeting. Portland, OR (invited)

Jenkins BD, Haddock* TL, Robinson* T, Menden-Deuer S, & MW Lomas. 2010. Niche Differentiation In Marine Cyanobacteria With Potential to Assimilate Nitrate Ocean Sciences Meeting. Portland, OR

*Harvey EL, HJ Jeong & S Menden-Deuer. 2013. Avoidance and attraction: Chemical cues influence predator-prey interactions of planktonic protists Limnology & Oceanography. 58:1176-1184

Harvey EL*, Strom S, & S. Menden-Deuer. 2010. Can the halo-tolerance of the toxic raphidophyte alga, Heterosigma akashiwo provide a refuge from protistan predation? Ocean Sciences Meeting. Portland, OR

Menden-Deuer S, Harvey* EL, KA Fredrickson Graham S* & S Strom. 2009. Predator impacts on the vertical distribution and population dynamics of the toxic raphidophyte Heterosigma akashiwo US Harmful Algal Bloom Meeting. Ocean Shores, WA

*Kim H., Spivak A. & S. Menden-Deuer. In Press. Lowered pH alters the swimming behaviors of the raphidophyte Heterosigma akashiwo: implications for bloom formation in an acidified ocean Harmful Algae. 26:1-11

Strom SL., *Harvey EL., Fredrickson KA. & S. Menden-Deuer. 2013. Broad halotolerance as a refuge from predation in the harmful raphidophyte alga Heterosigma akashiwo Journal of Phycology. 49:20-31

Menden-Deuer S, Harvey* EL, Day* WA & KA Fredrickson. 2009. Patchy prey and stealthy predators: enhanced protist grazing pressure within phytoplankton patches Estuaries and Coasts in a Changing World. CERF, Conference in Portland, Oregon

*Graff JR., *Forschner-Dancause SR., Menden-Deuer S., Long R. & DC. Rowley. 2013. Vibrio cholerae exploits sub-lethal concentrations of a competitor-produced antibiotic to avoid toxic interactions. Frontiers in Microbiology. 4:8. doi: 10.3389/fmicb.2013.00008

*Harvey EL. & S. Menden-Deuer. 2012. Predator-induced fleeing behaviors in phytoplankton: a new mechanism for harmful algal bloom formation? PLoS ONE. 7(9):e46438 doi: 10/1371/journal.pone.0046438

Menden-Deuer S Fredrickson KA & WA Day*. 2009. Relating in-situ observations of biological, chemical and physical properties to plankton population dynamics Ocean Carbon and Biogeochecmistry workshop. Woods Hole Oceanographic Institute, MA.

Strom SL & S Menden-Deuer. 2009. Heterosigma akashiwo from the northern Puget Sound: physiological and ecological investigations of a fish-killing alga Oceans and Human Health Seminar, University of Washington (invited)

Harvey* EL & S Menden-Deuer. 2009. Distribution and swimming behaviors of heterotrophic protist predators in response to the toxic raphidophyte alga Heterosigma akashiwo Aquatic Sciences Meeting, Nice, France

Menden-Deuer S. 2012. Structure-dependent phytoplankton photosynthesis and production: implications for the formation, maintenance, and decline of plankton patches Marine Ecology Progress Series. 468:15-30

Menden-Deuer S. 2008. Plankton on the move: biological drivers of plankton patchiness, predation and productivity University of Science and Technology, Hong Kong (invited)

Haddock* TL, Lomas MW, Menden-Deuer S, Zehr, JP & BD Jenkins. 2009. Enumeration of Novel Marine Cyanobacterial Nitrate Reductase Sequences Shows Vertical and Spatial Patterning Aquatic Sciences Meeting, Nice, France

*Lawrence CM, & S. Menden-Deuer. 2012. Drivers of protistan grazing pressure: seasonal signals of plankton community composition and environmental conditions Marine Ecology Progress Series 459:39-52

*Harvey EL, & S. Menden-Deuer. 2011. Avoidance, movement, and mortality: the role of predator-prey interactions in harmful algal bloom dynamics Limnology and Oceanography 56:371-378

Menden-Deuer S Fredrickson KA & Strom SL. 2008. Physical and biological drivers of HAB formation: Rates of formation, persistence and decline of a Heterosigma akashiwo event in East Sound, Washington, USA 13th International Conference on Harmful Algae, Hong Kong

Strom SL Fredrickson KA Crim R Graham S. & S. Menden-Deuer. 2008. Ecophysiology and toxicity of Heterosigma akashiwo isolates from eastern North Pacific coastal waters 13th International Conference on Harmful Algae, Hong Kong

Day* WS. & S Menden-Deuer. 2008. Finding the all you can eat buffet: do prey patches support fast predator growth? New England Estuarine Research Society. Rhode Island.

Harvey* E.L. & S Menden-Deuer. 2008. Effects of the toxic alga Heterosigma akashiwo on the distribution of single-celled planktonic grazers New England Estuarine Research Society, RI.

Menden-Deuer S. 2008. Patchy prey and stealthy predators: biological drivers of planktonic food-webs Department of Marine Sciences, University of Georgia, Athens (invited)

Menden-Deuer S. 2008. Patchy prey and stealthy predators: biological drivers of planktonic food-webs University of Alaska, Fairbanks (invited)

Menden-Deuer S. 2008. Plankton on the move: biological drivers of plankton predation and productivity School of Fisheries and Ocean Sciences, University of Alaska, Fairbanks (invited)

Day* WS, Menden-Deuer S. 2008. APTITUDE: Algorithms for Plankton Tracking and Identification of Trajectories for Underwater Device Ensembles Ocean Sciences Meeting, Orlando, Florida

Menden-Deuer S. 2007. Integrating models, experiments and field observations to examine predator-prey interactions in the plankton Estuarine Research Federation, Providence, Rhode Island

Menden-Deuer S, Fredrickson KA. 2008. Biological drivers of plankton layer formation in East Sound, Orcas Island, Washington Ocean Sciences Meeting, Orlando, Florida

Menden-Deuer S & Levin SA. 2007. Linking water column structure, phytoplankton distributions and planktonic productivity: predator behaviors are a key ingredient International Council for the Exploration of the Sea (ICES), Helsinki, Finland (invited)

Menden-Deuer S, Fredrickson KA & Wright HA. 2007. The role of biological drivers in the formation of plankton patches Estuarine Research Federation, Providence, Rhode Island

Menden-Deuer S. 2007. One but not the same: behavioral heterogeneity is the key to predicting forager distributions when resources are patchy Imperial College, London, UK (invited)

Menden-Deuer S. 2007. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors Woods Hole Oceanographic Institute (invited)

Menden-Deuer S. 2006. Linking zooplankton behaviors to the ecological dynamics of marine microbial food webs Stazione Zoologica Anton Dohrn, Naples, Italy (invited)

Menden-Deuer S. 2006. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors University of Connecticut, Avery Point Marine Sciences (invited)

Menden-Deuer S. 2006. Linking individual-level behaviors with ecological dynamics Department of Ecology and Evolutionary Biology, Princeton University, NJ (invited)

Menden-Deuer S. 2006. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors Massachusetts Institute of Technology (invited)

Menden-Deuer S. 2006. Can planktonic predators exploit patchy resource distributions? Gordon Research Conference on Marine Microbes. University of New England, Maine

Grünbaum D & Menden-Deuer S & RL Waters. 2006. Ecological effects of biomechanical and behavioral constraints on zooplankton that consume patchy resources ASLO Summer meeting, Victoria, British Columbia, Canada

Garcia* CC & Menden-Deuer, S. 2006. Do Phytoplankton Distributions Affect Zooplankton Feeding? ASLO Summer meeting, Victoria, British Columbia, Canada

Menden-Deuer S & Roth* JM. 2006. Spatial and Temporal Characteristics of Plankton-rich Layers in East Sound, Washington, USA Ocean Sciences Meeting, Honolulu, Hawaii

Lewis* CM & Menden-Deuer S. 2005. Behavioral responses of Oxyrrhis marina to prey layers of varying concentrations Estuarine Research Federation, Norfolk, Virginia

Menden-Deuer S. 2005. Linking individual behaviors with population distributions to elucidate ecological processes DIALOG VII, Sea Dauphin Island Marine Laboratory, Alabama (invited)

Lewis CM* & Menden-Deuer S. 2005. Aggregation of Oxyrrhis marina to thin layers of varying prey concentrations ASLO, Ocean Research Conference, Salt Lake City, Utah

Menden-Deuer S. 2005. Predators on the move: Empirical and theoretical analysis of zooplankton foraging behaviors Texas A&M University, Texas (invited)

Menden-Deuer S. 2005. Foraging behaviors of planktonic predators in patchy prey distributions Evolution 2005, Fairbanks Alaska

Menden-Deuer S & D Grünbaum. 2005. Zooplankton on the move: Understanding the consequences of individual-level differences for population distributions ASLO, Ocean Research Conference, Salt Lake City, Utah

Menden-Deuer S & D Grünbaum. 2004. Linking individual based processes with ecological dynamics Ocean Research Conference, Honolulu, Hawaii

Menden-Deuer S. 2004. Simultaneous assessment of microscopic movements and population distributions of planktonic consumers Friday Harbor Laboratories, Washington (invited)

Menden-Deuer S. 2003. On the dangers and delights of using allometric relationships for protist plankton Federation of European Microbiological Societies. Assessing the Variability in Aquatic Microbial Populations: Facts and Fiction. Institute for Limnology, Austrian Academy of Sciences, Mondsee, Austria (invited)

Saldarriaga JF, FJR Taylor, T Cavalier-Smith, S Menden-Deuer & PJ Keeling. 2003. Molecular data and the evolutionary history of dinoflagellates 7th International Conference on Modern and Fossil Dinoflagellates. Nagasaki, Japan

Menden-Deuer S, EJ Lessard & J Satterberg*. 2001. Growth dynamics of thecate heterotrophic dinoflagellates (Protoperidinium spp.) have implications for the abundance of their diatom prey ASLO, Aquatic Sciences Meeting, Albuquerque, New Mexico

Menden-Deuer S & D Grünbaum. 2002. Quantifying protozooplankton foraging behaviors in patchy/heterogeneous phytoplankton distributions ASLO Summer meeting, Victoria, British Columbia, Canada

Duggins DO & S Menden-Deuer. 2001. Regional and national marine science outreach at the Friday Harbor Laboratories. ASLO, Aquatic Sciences Meeting, Albuquerque, New Mexico

Menden-Deuer S & Fredrickson KA. 2010. Structure-dependent, protistan grazing and its implication for the formation, maintenance and decline of plankton patches Marine Ecology Progress Series 420: 57-71

Menden-Deuer S. 2010. Inherent high correlation of individual motility enhances population dispersal in a heterotrophic, planktonic protist PLoS Computational Biology. 6(10) e1000942 doi: 10.1371

Menden-Deuer S., Fredrickson KA. & SL. Strom 2010. Formation and decline of a Heterosigma akashiwo layer in East Sound, Washington, USA In K. C. Ho, M. Y. Zhou, and Y.Z. Qi [eds.], Harmful algae 2008. International Society for the Study of Harmful Algae, Hong Kong:98-103.

Menden-Deuer S. 2008. Spatial and temporal characteristics of plankton-rich layers in a shallow, temperate fjord Marine Ecology Progress Series 355: 21-30

Menden-Deuer S. 2006. An integrated model simulation and empirical laboratory on biological encounter rates Oceanography 19(4):185-189

Menden-Deuer S & D Grünbaum. 2006. Individual foraging behaviors and population distributions of planktonic predators aggregating to phytoplankton layers Limnology & Oceanography 51:109-116

Menden-Deuer S, EJ Lessard, J Satterberg* & D Grünbaum. 2005. Growth and starvation survival capacity of three species of the pallium feeding thecate dinoflagellate genus Protoperidinium (Peridiniacea, Dinophyceae) distributions Aquatic Microbial Ecology 41: 145-152

Saldarriaga JF, FJR Taylor, T Cavalier-Smith, S Menden-Deuer & PJ Keeling. 2004. Molecular data and the evolutionary history of dinoflagellates European Journal of Protistology 40: 85-111

Skovgaard A & S Menden-Deuer. 2003. Long-term exposure of dinoflagellates to 14C: Effects on growth rate and measurements of carbon content Journal of Plankton Research 25: 1005-1009

Smetacek V, C Klaas, S Menden-Deuer & TA Rynearson. 2002. Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front Deep-Sea Research II 49: 3835-3848

Menden-Deuer S, EJ Lessard & J Satterberg*. 2001. Effect of preservation on dinoflagellate and diatom cell volume, and consequences for carbon biomass predictions Marine Ecology Progress Series 222: 41-50

Menden-Deuer S & EJ Lessard. 2000. Carbon to volume relationships for dinoflagellates, diatoms, and other protist plankton Limnology & Oceanography 45: 569-579

Anderson S., *Franzè G., Kling J., Wilburn P., Kremer C., *Menden-Deuer S., Litchman E., Hutchins D., Rynearson T. 2022. The interactive effects of temperature and nutrients on a spring phytoplankton community Limnology and Oceanography. doi: 10.1002/lno.12023.

Menden-Deuer S., W.H. Slade and H. Dierssen. 2021. Promoting Instrument Development for New Research Avenues in Ocean Science: Opening the Black Box of Grazing Frontiers in Marine Sciences - Ocean Observation. https://doi.org/10.3389/fmars.2021.695938.

Menden-Deuer S., J. Rowlett, M. Nursultanov, S. Collins, T. Rynearson. 2021. Biodiversity of marine microbes is safeguarded by phenotypic heterogeneity in ecological traits PLoS ONE 16(8): e0254799. https://doi.org/10.1371/journal. pone.0254799.

*Fulfer V.M. & S. Menden-Deuer. 2021. Heterotrophic Dinoflagellate Growth and Grazing Rates Reduced by Microplastic Ingestion Frontiers in Marine Sciences. doi.org/10.3389/fmars.2021.716349.

Siegel D. A., ... H. McNair*, S. Menden-Deuer, F. Morison*, et al. 2021. An operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment Elementa Science of the Anthropocene.

*McNair H., F. Morison*, J.R. Graff T.A. Rynearson & S. Menden-Deuer. 2021. Microzooplankton grazing constrains pathways of carbon export in the subarctic North Pacific Limnology and Oceanography, https://doi.org/10.1002/lno.11783.

*McNair H., C. N. Hammond* & S. Menden-Deuer. 2021. Phytoplankton carbon and nitrogen biomass estimates are robust to volume measurement method and growth environment. Journal of Plankton Research, https://doi.org/10.1093/plankt/fbab014.

*Marrec P., A. Miller*, L. Maranda & S. Menden-Deuer. 2021. Virtual and remote, but hands-on undergraduate research in plankton ecology during the 2020 pandemic – covid-19 can’t stop this! Oceanography, https://doi.org/10.5670/oceanog.2021.104.

*Kane, M. K., A. Atkinson & S. Menden-Deuer. 2021. Lowered cameras reveal hidden behaviors of Antarctic krill. Current Biology, https://doi.org/10.1016/j.cub.2021.01.091.

*Marrec P., H. McNair*, G. Franzè, F. Morison*, J. P. Strock* & S. Menden-Deuer. 2021. Seasonal variability in planktonic food web structure and function of the Northeast U.S. Shelf. Limnology and Oceanography, https://doi.org/10.1002/lno.11696.

Strock, J.P. & S. Menden-Deuer. 2020. Temperature acclimation alters phytoplankton growth and production rates. Limnology and Oceanography, https://doi.org/10.1002/lno.11637.

Walcutt N*, Knorlein M, Cetinic I, Ljubesic Z, Bosak S, Sgouros T, Montalbano A, Neeley A, Menden-Deuer S, and Omand M. 2020. Assessment of holographic microscopy for quantifying marine particle size and concentration. Limnology and Oceanography: Methods.

*Morison F, Pierson J, *Oikonomou A, & S Menden-Deuer. 2020. Mesozooplankton grazing minimally impacts phytoplankton abundance during spring in the western North Atlantic. Peer J. doi: 10.7717/peerj.9430.

*Morison F, *G Franzè, E Harvey & S Menden-Deuer. 2020. Frequency of light fluctuations is key in modulating plankton trophic dynamics and their impact on primary production. Limnology & Oceanography – Letters. doi: 10.1002/lol2.10156.

Menden-Deuer S, *F Morison, AL Montalbano, *G Franzè, *J Strock, *E Rubin, *H McNair, C Mouw & *P Marrec. 2020. Multi-instrument assessment of phytoplankton abundance and cell sizes in mono-specific laboratory cultures and whole plankton community composition in the North Atlantic. Frontiers in Marine Sciences. doi.org/10.3389/fmars.2020.00254

Bolaños L, L Karp-Boss, CJ Choi, AZ Worden, J Graff, N Haëntjens, A Chase, A Della Penna, P Gaube, *F Morison, S Menden-Deuer, T Westberry, E Boss, M Behrenfeld, R O’Malley& S Giovannoni. 2020. Small phytoplankton dominate western North Atlantic biomass. The ISME Journal.

*Franzè G and Menden-Deuer S. 2020. Common temperature – growth dependency and acclimation response in three herbivorous protists. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13200.

*McNair H. and Menden-Deuer S. 2020. Protist grazing contributes to microbial food web at the upper boundary of the twilight zone in the subarctic Pacific. Marine Ecology Progress Series. DOI: https://doi.org/10.3354/meps13246.

*Morison F., Harvey E., Franze G., and Menden-Deuer S. 2019. Storm-induced predator-prey decoupling promotes springtime accumulation of North Atlantic phytoplankton. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00608.

*Roohani K, *Haubrich BA, *Yue KL, *D’Souza N, Montalbano A, Rynearson TA, Menden-Deuer S and Christopher W. Reid 2019 Trophic upgrading and mobilization of wax esters in microzooplankton PeerJ

*Rubin E, Cheng S, Montalbano A, Menden-Deuer S and Rynearson T. 2019. Transcriptomic response to feeding and starvation in a herbivorous dinoflagellate. Frontiers in Marine Science: Aquatic MIcrobiology. doi: 10.3389/fmars.2019.00246

Behrenfeld M., Moore R., Hostetler C., Graff J., Gaube P., Russell L., Chen G., Doney S., Giovannoni S., Liu H., Proctor C., Bolanos L., Huynh N., Davie-Martin C., Westberry T., Bates T., Bell T., Bidle K., Boss E., Brooks S., Carins B., Carlson C., Halsey K., Harvey E., Hu C., Karp-Boss L., Kleb M., Menden-Deuer S., *Morison F., Quinn P., Scarino A., Anderson B., Chowdhary J., Crosbie E., Ferrare R., Hair J., Hu Y., Janz S., Redemann J., Saltzman E., Shook M., Siegel D., Yang Martin M., Ziemba L. 2019. The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science motive and mission overview. Frontiers in Marine Science. doi: 10.3389/fmars.2019.00122.

*Kane M., Yopak R., Roman C., and S Menden-Deuer. 2018. Krill motion in the Southern Ocean: quantifying in situ krill movement behaviors and distributions during the late austral autumn and spring Limnology and Oceanography. https://doi.org/10.1002/lno.11024

* Morison F and S. Menden-Deuer. 2018. Seasonal similarity in rates of protistan herbivory in fjords along the Western Antarctic Peninsula Limnology and Oceanography.

Menden-Deuer S., Lawrence C. and *G. Franzè. 2018. Herbivorous protist growth and grazing rates at in situ and artificially elevated temperatures during an Arctic phytoplankton spring bloom. PeerJ. 10.7717/peerj.5264

Menden-Deuer S. & Rowlett J. 2018. The theory of games and microbe ecology. Theoretical Ecology

Lindeman C, DL Aknes, KJ Flynn & S Menden-Deuer. 2017 Modeling the Plankton–Enhancing the Integration of Biological Knowledge and Mechanistic Understanding. Frontiers in Marine Science

Xenopoulos MA, JA Downing, M Deep Kumar, S Menden-Deuer & M Voss. 2017 Headwaters to oceans: Ecological and biogeochemical contrasts across the aquatic continuum. Limnology and Oceanography

*Morison F & Menden-Deuer S 2017 Doing more with less: balancing sampling resolution with effort in measuring plankton growth and grazing rates Limnology & Oceanography: Methods

Grear J, T Rynearson, A Montalbano, B Govenar & S Menden-Deuer 2017 pCO2 effects on incubated, whole phytoplankton community species composition and production in a productive estuary. Estuarine, Coastal and Shelf Science

*Anderson SR & S Menden-Deuer 2016 Growth, grazing, and starvation survival in three heterotrophic dinoflagellate species Journal of Eukaryotic Microbiology

Menden-Deuer S & Kiørboe T. 2016 Small bugs with a big impact: linking plankton ecology with ecosystem processes Journal of Plankton Ecology. doi: 10.1093/plankt/fbw049//

Snelgrove, P., E. Vanden Berghe, P. Miloslavich, P. Archambault, N. Bailly, A. Brandt, A. Bucklin, M. Clark, F. Dahdouh-Guebas, P. Halpin, R. Hopcroft, K. Kaschner, B. Lascelles, L.A. Levin, S. Menden-Deuer, A. Metaxas, D. Obura, R. R. Reeves, T. Rynearson, K. Stocks, M. Tarzia, D. Tittensor, V. Tunnicliffe, B. Wallace, R. Wanless, T. Webb, P. Bernal, J. Rice, A. Rosenberg. 2016. Chapter 34: Gradients in Marine Biodiversity. In The United Nations World Ocean Assessment, published by the United Nations as part of the Global Reporting and Assessment of the State of the Marine Environment

*Graff J. & Menden-Deuer S. 2016 Physical and optical properties of plankton rich layers; toward prediction and strategic sampling of plankton patchiness. Marine Ecology Progress Series. Feature Article

Rynearson T. & Menden-Deuer S. 2016 Drivers that structure biodiversity in the plankton. Aquatic Microbial Ecology and Biogeochemistry: A dual perspective

*Orchard MJ, S Humphries, *Schuech R & S Menden-Deuer 2016 The influence of viscosity on the motility and sensory ability of the dinoflagellate, Heterocapsa triquetra. Journal of Plankton Research

*Harvey EL., Rynearson T. & Menden-Deuer S. 2015 Persistent intra-specific variation in genetic and behavioral traits in the raphidophyte, Heterosigma akashiwo. Frontiers in Microbiology

*Morison F. & Menden-Deuer S. 2015 Early spring phytoplankton dynamics in the subpolar North Atlantic: The influence of Protistan Herbivory. Limnology and Oceanography

Menden-Deuer S. & Montalbano A. 2015 Bloom formation potential in the toxic dinoflagellate Akashiwo sanguinea: clues from movement behaviors and growth characteristics. Harmful Algae

*Kim H & Menden-Deuer S. 2014 Estimating the effects of ocean acidification-induced behavioral shifts on primary production rates of Heterosigma akashiwo. Proceedings of the International Society for the Study of Harmful Algae.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing PLoS Biol 12(6): e1001889. doi:10.1371/journal.pbio.1001889

*Schuech R & Menden-Deuer S. 2014. Going ballistic in the plankton – anisotropic swimming behavior of marine protists. Limnology & Oceanography: Fluids & Environments: 4: 1-16

Menden-Deuer S. & Rowlett J. 2014. Behavioral heterogeneity maintains high species diversity in the plankton. Journal of the Royal Society Interface. 11: 20140031

*Chappell PD., *Whitney LP., *Haddock TL., Menden-Deuer S., Roy EG., Wells ML. & BD Jenkins 2013. Thalassiosira spp. community composition shifts in response to an eddy in the northeast Pacific Ocean Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00273

Rubin CB., Menden-Deuer S. & EL*Harvey. 2013. Plankton on the Move. Leonardo 46:412-413.

*Kim H & S Menden-Deuer. 2013. Reliability of rapid, semi-automated assessment of plankton abundance, biomass, and growth rate estimates: Coulter Counter versus light microscope measurements. Limnology & Oceanography Methods 11: 382-393

*Harvey EL, HJ Jeong & S Menden-Deuer. 2013. Avoidance and attraction: Chemical cues influence predator-prey interactions of planktonic protists Limnology & Oceanography. 58:1176-1184

*Kim H., Spivak A. & S. Menden-Deuer. In Press. Lowered pH alters the swimming behaviors of the raphidophyte Heterosigma akashiwo: implications for bloom formation in an acidified ocean Harmful Algae. 26:1-11

Strom SL., *Harvey EL., Fredrickson KA. & S. Menden-Deuer. 2013. Broad halotolerance as a refuge from predation in the harmful raphidophyte alga Heterosigma akashiwo Journal of Phycology. 49:20-31

*Graff JR., *Forschner-Dancause SR., Menden-Deuer S., Long R. & DC. Rowley. 2013. Vibrio cholerae exploits sub-lethal concentrations of a competitor-produced antibiotic to avoid toxic interactions. Frontiers in Microbiology. 4:8. doi: 10.3389/fmicb.2013.00008

*Harvey EL. & S. Menden-Deuer. 2012. Predator-induced fleeing behaviors in phytoplankton: a new mechanism for harmful algal bloom formation? PLoS ONE. 7(9):e46438 doi: 10/1371/journal.pone.0046438

Menden-Deuer S. 2012. Structure-dependent phytoplankton photosynthesis and production: implications for the formation, maintenance, and decline of plankton patches Marine Ecology Progress Series. 468:15-30

*Lawrence CM, & S. Menden-Deuer. 2012. Drivers of protistan grazing pressure: seasonal signals of plankton community composition and environmental conditions Marine Ecology Progress Series 459:39-52

*Harvey EL, & S. Menden-Deuer. 2011. Avoidance, movement, and mortality: the role of predator-prey interactions in harmful algal bloom dynamics Limnology and Oceanography 56:371-378

Menden-Deuer S & Fredrickson KA. 2010. Structure-dependent, protistan grazing and its implication for the formation, maintenance and decline of plankton patches Marine Ecology Progress Series 420: 57-71

Menden-Deuer S. 2010. Inherent high correlation of individual motility enhances population dispersal in a heterotrophic, planktonic protist PLoS Computational Biology. 6(10) e1000942 doi: 10.1371

Menden-Deuer S., Fredrickson KA. & SL. Strom 2010. Formation and decline of a Heterosigma akashiwo layer in East Sound, Washington, USA In K. C. Ho, M. Y. Zhou, and Y.Z. Qi [eds.], Harmful algae 2008. International Society for the Study of Harmful Algae, Hong Kong:98-103.

Menden-Deuer S. 2008. Spatial and temporal characteristics of plankton-rich layers in a shallow, temperate fjord Marine Ecology Progress Series 355: 21-30

Menden-Deuer S. 2006. An integrated model simulation and empirical laboratory on biological encounter rates Oceanography 19(4):185-189

Menden-Deuer S & D Grünbaum. 2006. Individual foraging behaviors and population distributions of planktonic predators aggregating to phytoplankton layers Limnology & Oceanography 51:109-116

Menden-Deuer S, EJ Lessard, J Satterberg* & D Grünbaum. 2005. Growth and starvation survival capacity of three species of the pallium feeding thecate dinoflagellate genus Protoperidinium (Peridiniacea, Dinophyceae) distributions Aquatic Microbial Ecology 41: 145-152

Saldarriaga JF, FJR Taylor, T Cavalier-Smith, S Menden-Deuer & PJ Keeling. 2004. Molecular data and the evolutionary history of dinoflagellates European Journal of Protistology 40: 85-111

Skovgaard A & S Menden-Deuer. 2003. Long-term exposure of dinoflagellates to 14C: Effects on growth rate and measurements of carbon content Journal of Plankton Research 25: 1005-1009

Smetacek V, C Klaas, S Menden-Deuer & TA Rynearson. 2002. Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front Deep-Sea Research II 49: 3835-3848

Menden-Deuer S, EJ Lessard & J Satterberg*. 2001. Effect of preservation on dinoflagellate and diatom cell volume, and consequences for carbon biomass predictions Marine Ecology Progress Series 222: 41-50

Menden-Deuer S & EJ Lessard. 2000. Carbon to volume relationships for dinoflagellates, diatoms, and other protist plankton Limnology & Oceanography 45: 569-579

Menden-Deuer S. & Harvey* EL. 2010. Avoidance, movement, and mortality: the role of predator-prey interactions in harmful algal bloom dynamics Eastern Pacific Ocean Conference, Mt. Hood, OR

Menden-Deuer S. 2010. High-correlation of individual motility enhances population dispersal rates in a heterotrophic protist Gordon Research Conference, Marine Microbes, Tilton, NH

Harvey EL* & S. Menden-Deuer. 2010. The role of halo-tolerance in providing a refuge for the toxic raphidophyte alga, Heterosigma akashiwo from heterotrophic protists and enhancing bloom formation. Gordon Research Conference, Marine Microbes, Tilton, NH

Menden-Deuer S. 2010. Plankton on the move: effects of consumer foraging behaviors on marine microbial food webs. Seoul National University, Seoul, Korea (invited)

Menden-Deuer S, Harvey* EL, Day* WA & KA Fredrickson. 2010. Patchy prey and stealthy predators: enhanced protist grazing pressure within phytoplankton patches Ocean Sciences Meeting. Portland, OR (invited)

Jenkins BD, Haddock* TL, Robinson* T, Menden-Deuer S, & MW Lomas. 2010. Niche Differentiation In Marine Cyanobacteria With Potential to Assimilate Nitrate Ocean Sciences Meeting. Portland, OR

Harvey EL*, Strom S, & S. Menden-Deuer. 2010. Can the halo-tolerance of the toxic raphidophyte alga, Heterosigma akashiwo provide a refuge from protistan predation? Ocean Sciences Meeting. Portland, OR

Menden-Deuer S, Harvey* EL, KA Fredrickson Graham S* & S Strom. 2009. Predator impacts on the vertical distribution and population dynamics of the toxic raphidophyte Heterosigma akashiwo US Harmful Algal Bloom Meeting. Ocean Shores, WA

Menden-Deuer S, Harvey* EL, Day* WA & KA Fredrickson. 2009. Patchy prey and stealthy predators: enhanced protist grazing pressure within phytoplankton patches Estuaries and Coasts in a Changing World. CERF, Conference in Portland, Oregon

Menden-Deuer S Fredrickson KA & WA Day*. 2009. Relating in-situ observations of biological, chemical and physical properties to plankton population dynamics Ocean Carbon and Biogeochecmistry workshop. Woods Hole Oceanographic Institute, MA.

Strom SL & S Menden-Deuer. 2009. Heterosigma akashiwo from the northern Puget Sound: physiological and ecological investigations of a fish-killing alga Oceans and Human Health Seminar, University of Washington (invited)

Harvey* EL & S Menden-Deuer. 2009. Distribution and swimming behaviors of heterotrophic protist predators in response to the toxic raphidophyte alga Heterosigma akashiwo Aquatic Sciences Meeting, Nice, France

Menden-Deuer S. 2008. Plankton on the move: biological drivers of plankton patchiness, predation and productivity University of Science and Technology, Hong Kong (invited)

Haddock* TL, Lomas MW, Menden-Deuer S, Zehr, JP & BD Jenkins. 2009. Enumeration of Novel Marine Cyanobacterial Nitrate Reductase Sequences Shows Vertical and Spatial Patterning Aquatic Sciences Meeting, Nice, France

Menden-Deuer S Fredrickson KA & Strom SL. 2008. Physical and biological drivers of HAB formation: Rates of formation, persistence and decline of a Heterosigma akashiwo event in East Sound, Washington, USA 13th International Conference on Harmful Algae, Hong Kong

Strom SL Fredrickson KA Crim R Graham S. & S. Menden-Deuer. 2008. Ecophysiology and toxicity of Heterosigma akashiwo isolates from eastern North Pacific coastal waters 13th International Conference on Harmful Algae, Hong Kong

Day* WS. & S Menden-Deuer. 2008. Finding the all you can eat buffet: do prey patches support fast predator growth? New England Estuarine Research Society. Rhode Island.

Harvey* E.L. & S Menden-Deuer. 2008. Effects of the toxic alga Heterosigma akashiwo on the distribution of single-celled planktonic grazers New England Estuarine Research Society, RI.

Menden-Deuer S. 2008. Patchy prey and stealthy predators: biological drivers of planktonic food-webs Department of Marine Sciences, University of Georgia, Athens (invited)

Menden-Deuer S. 2008. Patchy prey and stealthy predators: biological drivers of planktonic food-webs University of Alaska, Fairbanks (invited)

Menden-Deuer S. 2008. Plankton on the move: biological drivers of plankton predation and productivity School of Fisheries and Ocean Sciences, University of Alaska, Fairbanks (invited)

Day* WS, Menden-Deuer S. 2008. APTITUDE: Algorithms for Plankton Tracking and Identification of Trajectories for Underwater Device Ensembles Ocean Sciences Meeting, Orlando, Florida

Menden-Deuer S. 2007. Integrating models, experiments and field observations to examine predator-prey interactions in the plankton Estuarine Research Federation, Providence, Rhode Island

Menden-Deuer S, Fredrickson KA. 2008. Biological drivers of plankton layer formation in East Sound, Orcas Island, Washington Ocean Sciences Meeting, Orlando, Florida

Menden-Deuer S & Levin SA. 2007. Linking water column structure, phytoplankton distributions and planktonic productivity: predator behaviors are a key ingredient International Council for the Exploration of the Sea (ICES), Helsinki, Finland (invited)

Menden-Deuer S, Fredrickson KA & Wright HA. 2007. The role of biological drivers in the formation of plankton patches Estuarine Research Federation, Providence, Rhode Island

Menden-Deuer S. 2007. One but not the same: behavioral heterogeneity is the key to predicting forager distributions when resources are patchy Imperial College, London, UK (invited)

Menden-Deuer S. 2007. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors Woods Hole Oceanographic Institute (invited)

Menden-Deuer S. 2006. Linking zooplankton behaviors to the ecological dynamics of marine microbial food webs Stazione Zoologica Anton Dohrn, Naples, Italy (invited)

Menden-Deuer S. 2006. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors University of Connecticut, Avery Point Marine Sciences (invited)

Menden-Deuer S. 2006. Linking individual-level behaviors with ecological dynamics Department of Ecology and Evolutionary Biology, Princeton University, NJ (invited)

Menden-Deuer S. 2006. Patchy prey & stealthy predators: empirical and theoretical analysis of zooplankton behaviors Massachusetts Institute of Technology (invited)

Menden-Deuer S. 2006. Can planktonic predators exploit patchy resource distributions? Gordon Research Conference on Marine Microbes. University of New England, Maine

Grünbaum D & Menden-Deuer S & RL Waters. 2006. Ecological effects of biomechanical and behavioral constraints on zooplankton that consume patchy resources ASLO Summer meeting, Victoria, British Columbia, Canada

Garcia* CC & Menden-Deuer, S. 2006. Do Phytoplankton Distributions Affect Zooplankton Feeding? ASLO Summer meeting, Victoria, British Columbia, Canada

Menden-Deuer S & Roth* JM. 2006. Spatial and Temporal Characteristics of Plankton-rich Layers in East Sound, Washington, USA Ocean Sciences Meeting, Honolulu, Hawaii

Lewis* CM & Menden-Deuer S. 2005. Behavioral responses of Oxyrrhis marina to prey layers of varying concentrations Estuarine Research Federation, Norfolk, Virginia

Menden-Deuer S. 2005. Linking individual behaviors with population distributions to elucidate ecological processes DIALOG VII, Sea Dauphin Island Marine Laboratory, Alabama (invited)

Lewis CM* & Menden-Deuer S. 2005. Aggregation of Oxyrrhis marina to thin layers of varying prey concentrations ASLO, Ocean Research Conference, Salt Lake City, Utah

Menden-Deuer S. 2005. Predators on the move: Empirical and theoretical analysis of zooplankton foraging behaviors Texas A&M University, Texas (invited)

Menden-Deuer S. 2005. Foraging behaviors of planktonic predators in patchy prey distributions Evolution 2005, Fairbanks Alaska

Menden-Deuer S & D Grünbaum. 2005. Zooplankton on the move: Understanding the consequences of individual-level differences for population distributions ASLO, Ocean Research Conference, Salt Lake City, Utah

Menden-Deuer S & D Grünbaum. 2004. Linking individual based processes with ecological dynamics Ocean Research Conference, Honolulu, Hawaii

Menden-Deuer S. 2004. Simultaneous assessment of microscopic movements and population distributions of planktonic consumers Friday Harbor Laboratories, Washington (invited)

Menden-Deuer S. 2003. On the dangers and delights of using allometric relationships for protist plankton Federation of European Microbiological Societies. Assessing the Variability in Aquatic Microbial Populations: Facts and Fiction. Institute for Limnology, Austrian Academy of Sciences, Mondsee, Austria (invited)

Saldarriaga JF, FJR Taylor, T Cavalier-Smith, S Menden-Deuer & PJ Keeling. 2003. Molecular data and the evolutionary history of dinoflagellates 7th International Conference on Modern and Fossil Dinoflagellates. Nagasaki, Japan

Menden-Deuer S, EJ Lessard & J Satterberg*. 2001. Growth dynamics of thecate heterotrophic dinoflagellates (Protoperidinium spp.) have implications for the abundance of their diatom prey ASLO, Aquatic Sciences Meeting, Albuquerque, New Mexico

Menden-Deuer S & D Grünbaum. 2002. Quantifying protozooplankton foraging behaviors in patchy/heterogeneous phytoplankton distributions ASLO Summer meeting, Victoria, British Columbia, Canada

Duggins DO & S Menden-Deuer. 2001. Regional and national marine science outreach at the Friday Harbor Laboratories. ASLO, Aquatic Sciences Meeting, Albuquerque, New Mexico